tadbit 0.2.0 Analyze, model, and explore 3C-based data
TADbit is a complete Python library to deal with all steps to analyze, model, and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models.
- Website: https://3dgenomes.github.io/TADbit/
- License: GPL 3+
- Package source: bioinformatics.scm
- Patches: None
- Builds: x86_64-linux, i686-linux