r-atacseqqc 1.12.3 ATAC-seq quality control
ATAC-seq, an assay for Transposase-Accessible Chromatin using sequencing, is a rapid and sensitive method for chromatin accessibility analysis. It was developed as an alternative method to MNase-seq, FAIRE-seq and DNAse-seq. The ATACseqQC package was developed to help users to quickly assess whether their ATAC-seq experiment is successful. It includes diagnostic plots of fragment size distribution, proportion of mitochondria reads, nucleosome positioning pattern, and CTCF or other Transcript Factor footprints.
- Website: https://bioconductor.org/packages/ATACseqQC/
- License: GPL 2+
- Package source: bioconductor.scm
- Patches: None
- Builds: x86_64-linux, i686-linux