python-pairtools 0.3.0 Process mapped Hi-C data
Pairtools is a simple and fast command-line framework to process sequencing data from a Hi-C experiment. Process pair-end sequence alignments and perform the following operations:
detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end sequences of Hi-C DNA molecules
sort
.pairs
files for downstream analysesdetect, tag and remove PCR/optical duplicates
generate extensive statistics of Hi-C datasets
select Hi-C pairs given flexibly defined criteria
restore
.sam
alignments from Hi-C pairs.
- Website: https://github.com/mirnylab/pairtools
- License: Expat
- Package source: bioinformatics.scm
- Patches: None
- Builds: x86_64-linux, i686-linux