Guix

Pyicoteo is a suite of tools for the analysis of high-throughput genetic sequencing data. It works with genomic coordinates. There are currently six different command-line tools:

1. pyicoregion: for generating exploratory regions automatically;

2. pyicoenrich: for differential enrichment between two conditions;

3. pyicoclip: for calling CLIP-Seq peaks without a control;

4. pyicos: for genomic coordinates manipulation;

5. pyicoller: for peak calling on punctuated ChIP-Seq;

6. pyicount: to count how many reads from N experiment files overlap in a region file;

7. pyicotrocol: to combine operations from pyicoteo.