hisat 0.1.4 Hierarchical indexing for spliced alignment of transcripts
HISAT is a fast and sensitive spliced alignment program for mapping RNA-seq reads. In addition to one global FM index that represents a whole genome, HISAT uses a large set of small FM indexes that collectively cover the whole genome. These small indexes (called local indexes) combined with several alignment strategies enable effective alignment of RNA-seq reads, in particular, reads spanning multiple exons.
- Website: https://ccb.jhu.edu/software/hisat/index.shtml
- License: GPL 3+
- Package source: bioinformatics.scm
- Patches: None
- Builds: x86_64-linux