fxtract 2.3 Extract sequences from FASTA and FASTQ files
Fxtract extracts sequences from a protein or nucleotide fastx (FASTA or FASTQ) file given a subsequence. It uses a simple substring search for basic tasks but can change to using POSIX regular expressions, PCRE, hash lookups or multi-pattern searching as required. By default fxtract looks in the sequence of each record but can also be told to look in the header, comment or quality sections.
- Website: https://github.com/ctSkennerton/fxtract
- License: Expat
- Package source: bioinformatics.scm
- Patches: None
- Builds: x86_64-linux